Samarium in PDB 3klt: Crystal Structure of A Vimentin Fragment

The structure of Crystal Structure of A Vimentin Fragment, PDB code: 3klt was solved by S.Nicolet, S.V.Strelkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.47 / 2.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	63.200, 30.100, 82.980, 90.00, 102.71, 90.00
R / Rfree (%)	29.1 / 33.1

The structure of Crystal Structure of A Vimentin Fragment also contains other interesting chemical elements:

Calcium

(Ca)

6 atoms

The binding sites of Samarium atom in the Crystal Structure of A Vimentin Fragment (pdb code 3klt). This binding sites where shown within 5.0 Angstroms radius around Samarium atom.
In total 3 binding sites of Samarium where determined in the Crystal Structure of A Vimentin Fragment, PDB code: 3klt:
Jump to Samarium binding site number: 1; 2; 3;

Samarium binding site 1 out of 3 in the Crystal Structure of A Vimentin Fragment


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 1 of Crystal Structure of A Vimentin Fragment within 5.0Å range: probe atom residue distance (Å) B Occ A:Sm3 b:0.0 occ:0.74 OE1 A:GLU288 4.3 0.7 1.0 OE2 A:GLU288 4.5 68.0 1.0 CD A:GLU288 4.8 99.3 1.0

Samarium binding site 2 out of 3 in the Crystal Structure of A Vimentin Fragment


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 2 of Crystal Structure of A Vimentin Fragment within 5.0Å range: probe atom residue distance (Å) B Occ B:Sm1 b:70.0 occ:1.00 OH7 D:1PE3 3.5 30.8 1.0 OE2 D:GLU286 3.7 92.7 1.0 O4 D:PGE6 3.8 50.1 1.0 C6 D:PGE6 3.9 60.6 1.0 C5 D:PGE6 4.2 83.8 1.0 OE1 D:GLU286 4.3 89.6 1.0 OE1 B:GLU286 4.3 45.4 1.0 OE2 B:GLU286 4.4 49.2 1.0 C16 D:1PE3 4.4 54.8 1.0 CD D:GLU286 4.5 0.5 1.0 CD B:GLU286 4.8 45.6 1.0

Samarium binding site 3 out of 3 in the Crystal Structure of A Vimentin Fragment


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 3 of Crystal Structure of A Vimentin Fragment within 5.0Å range: probe atom residue distance (Å) B Occ D:Sm2 b:0.1 occ:1.00 OE1 D:GLU329 4.6 0.0 1.0

S.Nicolet, H.Herrmann, U.Aebi, S.V.Strelkov. Atomic Structure of Vimentin Coil 2. J.Struct.Biol. V. 170 369 2010.
ISSN: ISSN 1047-8477
PubMed: 20176112
DOI: 10.1016/J.JSB.2010.02.012