Samarium in PDB 1uzp: Integrin Binding CBEGF22-TB4-CBEGF33 Fragment of Human Fibrillin-1, Sm Bound Form CBEGF23 Domain Only.

The structure of Integrin Binding CBEGF22-TB4-CBEGF33 Fragment of Human Fibrillin-1, Sm Bound Form CBEGF23 Domain Only., PDB code: 1uzp was solved by S.S.J.Lee, V.Knott, K.Harlos, P.A.Handford, D.I.Stuart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.78
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	42.500, 65.100, 102.300, 90.00, 90.00, 90.00
R / Rfree (%)	21 / 25.4

The binding sites of Samarium atom in the Integrin Binding CBEGF22-TB4-CBEGF33 Fragment of Human Fibrillin-1, Sm Bound Form CBEGF23 Domain Only. (pdb code 1uzp). This binding sites where shown within 5.0 Angstroms radius around Samarium atom.
In total 3 binding sites of Samarium where determined in the Integrin Binding CBEGF22-TB4-CBEGF33 Fragment of Human Fibrillin-1, Sm Bound Form CBEGF23 Domain Only., PDB code: 1uzp:
Jump to Samarium binding site number: 1; 2; 3;

Samarium binding site 1 out of 3 in the Integrin Binding CBEGF22-TB4-CBEGF33 Fragment of Human Fibrillin-1, Sm Bound Form CBEGF23 Domain Only.


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 1 of Integrin Binding CBEGF22-TB4-CBEGF33 Fragment of Human Fibrillin-1, Sm Bound Form CBEGF23 Domain Only. within 5.0Å range: probe atom residue distance (Å) B Occ A:Sm2648 b:24.9 occ:1.00 O A:VAL1488 2.3 29.1 1.0 OD1 A:ASP1487 2.3 32.0 1.0 O A:SER1508 2.3 33.5 1.0 OD1 A:ASN1504 2.4 23.1 1.0 O A:THR1505 2.4 36.5 1.0 OE1 A:GLU1490 2.5 27.4 1.0 O A:GLY1507 2.6 33.7 1.0 OD2 A:ASP1487 2.6 34.8 1.0 CG A:ASP1487 2.8 32.0 1.0 OE2 A:GLU1490 2.9 35.9 1.0 CD A:GLU1490 3.0 36.6 1.0 C A:SER1508 3.4 30.8 1.0 CG A:ASN1504 3.5 25.8 1.0 C A:GLY1507 3.5 38.4 1.0 C A:VAL1488 3.5 24.5 1.0 C A:THR1505 3.6 31.4 1.0 CA A:SER1508 3.8 30.2 1.0 N A:THR1505 4.0 25.6 1.0 ND2 A:ASN1504 4.0 26.0 1.0 N A:SER1508 4.1 32.0 1.0 N A:VAL1488 4.2 25.2 1.0 N A:GLY1507 4.2 37.3 1.0 CB A:ASP1487 4.3 34.4 1.0 C A:PRO1506 4.3 40.0 1.0 O A:HOH2023 4.4 25.2 1.0 N A:ASN1489 4.4 25.2 1.0 CA A:ASN1489 4.5 25.4 1.0 N A:GLU1490 4.5 23.6 1.0 CA A:VAL1488 4.5 25.8 1.0 CA A:THR1505 4.5 28.4 1.0 N A:PRO1506 4.5 40.2 1.0 O A:HOH2028 4.5 25.3 1.0 N A:TYR1509 4.5 32.5 1.0 CG A:GLU1490 4.6 32.3 1.0 CA A:PRO1506 4.6 39.5 1.0 CA A:GLY1507 4.6 38.7 1.0 O A:HOH2024 4.6 93.3 1.0 CB A:ASN1504 4.7 24.3 1.0 O A:PRO1506 4.8 39.6 1.0 O A:HOH2022 4.8 50.7 1.0 C A:ASP1487 4.8 25.3 1.0 CA A:ASN1504 4.9 28.6 1.0 C A:ASN1504 4.9 30.5 1.0 OG1 A:THR1505 4.9 31.0 1.0 CB A:VAL1488 4.9 29.8 1.0

Samarium binding site 2 out of 3 in the Integrin Binding CBEGF22-TB4-CBEGF33 Fragment of Human Fibrillin-1, Sm Bound Form CBEGF23 Domain Only.


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 2 of Integrin Binding CBEGF22-TB4-CBEGF33 Fragment of Human Fibrillin-1, Sm Bound Form CBEGF23 Domain Only. within 5.0Å range: probe atom residue distance (Å) B Occ A:Sm2649 b:23.2 occ:1.00 OE2 A:GLU1609 2.2 18.4 1.0 O A:ILE1607 2.3 27.0 1.0 OD1 A:ASN1624 2.3 26.2 1.0 O A:SER1628 2.4 29.7 1.0 O A:THR1625 2.5 26.4 1.0 OD2 A:ASP1606 2.5 30.1 1.0 OD1 A:ASP1606 2.5 29.9 1.0 O A:HOH2138 2.6 27.5 1.0 CG A:ASP1606 2.8 28.3 1.0 CG A:ASN1624 3.4 30.9 1.0 CD A:GLU1609 3.4 36.9 1.0 C A:ILE1607 3.5 23.8 1.0 C A:SER1628 3.5 24.2 1.0 N A:SER1628 3.6 28.1 1.0 C A:THR1625 3.7 30.8 1.0 OE1 A:GLU1609 3.8 33.2 1.0 ND2 A:ASN1624 3.9 24.0 1.0 N A:THR1625 3.9 30.9 1.0 N A:GLY1627 4.1 29.7 1.0 CA A:SER1628 4.1 26.7 1.0 N A:ILE1607 4.2 22.5 1.0 C A:GLY1627 4.3 28.5 1.0 CB A:ASP1606 4.3 24.0 1.0 CA A:ASP1608 4.3 25.1 1.0 N A:ASP1608 4.4 24.7 1.0 CA A:THR1625 4.4 31.3 1.0 N A:GLU1609 4.4 25.2 1.0 CA A:ILE1607 4.5 24.2 1.0 CA A:GLY1627 4.6 26.3 1.0 O A:GLY1594 4.6 26.8 1.0 CB A:ASN1624 4.6 31.1 1.0 N A:PHE1629 4.6 29.8 1.0 N A:PHE1626 4.7 29.8 1.0 C A:ASN1624 4.7 36.8 1.0 CG A:GLU1609 4.7 29.5 1.0 C A:PHE1626 4.7 35.0 1.0 C A:ASP1606 4.7 23.9 1.0 CA A:ASN1624 4.8 33.6 1.0 CA A:PHE1626 4.9 33.5 1.0 OG1 A:THR1625 4.9 34.3 1.0 CB A:ILE1607 4.9 27.6 1.0 C A:ASP1608 5.0 27.3 1.0 CB A:PHE1629 5.0 27.6 1.0

Samarium binding site 3 out of 3 in the Integrin Binding CBEGF22-TB4-CBEGF33 Fragment of Human Fibrillin-1, Sm Bound Form CBEGF23 Domain Only.


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 3 of Integrin Binding CBEGF22-TB4-CBEGF33 Fragment of Human Fibrillin-1, Sm Bound Form CBEGF23 Domain Only. within 5.0Å range: probe atom residue distance (Å) B Occ A:Sm2650 b:23.1 occ:0.30 OE2 A:GLU1584 2.3 43.0 1.0 CD A:GLU1584 3.5 32.8 1.0 CG A:GLU1584 4.2 28.4 1.0 OE1 A:GLU1584 4.5 33.4 1.0

S.S.J.Lee, V.Knott, J.Jovanovi, K.Harlos, J.Grimes, L.Choulier, H.Mardon, D.I.Stuart, P.A.Handford. Structure of the Integrin Binding Fragment From Fibrillin-1 Gives New Insights Into Microfibril Organization Structure V. 12 717 2004.
ISSN: ISSN 0969-2126
PubMed: 15062093
DOI: 10.1016/J.STR.2004.02.023