Samarium in PDB 5k97: Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+
Protein crystallography data
The structure of Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+, PDB code: 5k97
was solved by
S.E.Tsutakawa,
A.S.Arvai,
J.A.Tainer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.85 /
2.10
|
Space group
|
P 31 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
105.236,
105.236,
104.548,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
18.2 /
21.9
|
Other elements in 5k97:
The structure of Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+ also contains other interesting chemical elements:
Samarium Binding Sites:
The binding sites of Samarium atom in the Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+
(pdb code 5k97). This binding sites where shown within
5.0 Angstroms radius around Samarium atom.
In total 8 binding sites of Samarium where determined in the
Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+, PDB code: 5k97:
Jump to Samarium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Samarium binding site 1 out
of 8 in 5k97
Go back to
Samarium Binding Sites List in 5k97
Samarium binding site 1 out
of 8 in the Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+
![](/pictures/SM/pdb/k9/5k97-SM-sphere_01.jpg) Mono view
![](/pictures/SM/pdb/k9/5k97-SM-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Samarium with other atoms in the Sm binding
site number 1 of Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sm401
b:58.7
occ:0.57
|
CG
|
A:ASP181
|
2.3
|
83.2
|
1.0
|
O
|
A:HOH689
|
2.3
|
81.1
|
1.0
|
OP1
|
E:DT7
|
2.3
|
90.0
|
1.0
|
OD2
|
A:ASP181
|
2.3
|
88.4
|
1.0
|
OD1
|
A:ASP181
|
2.4
|
73.7
|
1.0
|
SM
|
A:SM403
|
2.5
|
45.5
|
0.6
|
OE2
|
A:GLU160
|
2.7
|
71.2
|
1.0
|
P
|
E:DT7
|
3.1
|
73.2
|
1.0
|
CB
|
A:ASP181
|
3.2
|
64.5
|
1.0
|
HB2
|
A:ASP181
|
3.2
|
77.4
|
1.0
|
OP3
|
E:DT7
|
3.2
|
66.4
|
1.0
|
HB3
|
A:ASP181
|
3.3
|
77.4
|
1.0
|
CD
|
A:GLU160
|
3.3
|
80.7
|
1.0
|
N
|
A:GLY2
|
3.4
|
54.8
|
1.0
|
OP2
|
E:DT7
|
3.4
|
73.3
|
1.0
|
SM
|
A:SM404
|
3.5
|
41.2
|
0.5
|
OE1
|
A:GLU160
|
3.6
|
63.2
|
1.0
|
HD22
|
A:ASN233
|
3.7
|
90.9
|
1.0
|
HD21
|
A:ASN233
|
3.7
|
90.9
|
1.0
|
HB3
|
A:ASP179
|
4.0
|
73.5
|
1.0
|
ND2
|
A:ASN233
|
4.0
|
75.7
|
1.0
|
HG2
|
A:GLU160
|
4.3
|
82.9
|
1.0
|
HZ1
|
A:LYS93
|
4.3
|
0.1
|
1.0
|
HH
|
A:TYR234
|
4.3
|
69.7
|
1.0
|
HA2
|
A:GLY2
|
4.4
|
66.8
|
1.0
|
CG
|
A:GLU160
|
4.4
|
69.1
|
1.0
|
HE2
|
A:PHE185
|
4.4
|
46.3
|
1.0
|
HB2
|
A:GLU160
|
4.4
|
46.0
|
1.0
|
HZ2
|
A:LYS93
|
4.5
|
0.1
|
1.0
|
CA
|
A:GLY2
|
4.5
|
55.7
|
1.0
|
O
|
A:HOH651
|
4.6
|
51.7
|
1.0
|
O5'
|
E:DT7
|
4.6
|
77.9
|
1.0
|
CA
|
A:ASP181
|
4.6
|
51.6
|
1.0
|
CB
|
A:ASP179
|
4.6
|
61.2
|
1.0
|
OD2
|
A:ASP179
|
4.6
|
96.2
|
1.0
|
HB2
|
A:ASP179
|
4.6
|
73.5
|
1.0
|
H
|
A:ASP181
|
4.6
|
60.3
|
1.0
|
CG
|
A:ASP179
|
4.7
|
93.1
|
1.0
|
OH
|
A:TYR234
|
4.8
|
58.0
|
1.0
|
HA
|
A:ASP181
|
4.8
|
61.9
|
1.0
|
NZ
|
A:LYS93
|
4.9
|
92.6
|
1.0
|
CB
|
A:GLU160
|
4.9
|
38.3
|
1.0
|
OE1
|
A:GLU158
|
4.9
|
83.5
|
1.0
|
H5'
|
E:DT7
|
4.9
|
0.9
|
1.0
|
O
|
E:HOH113
|
5.0
|
69.8
|
1.0
|
|
Samarium binding site 2 out
of 8 in 5k97
Go back to
Samarium Binding Sites List in 5k97
Samarium binding site 2 out
of 8 in the Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+
![](/pictures/SM/pdb/k9/5k97-SM-sphere_02.jpg) Mono view
![](/pictures/SM/pdb/k9/5k97-SM-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Samarium with other atoms in the Sm binding
site number 2 of Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sm402
b:88.2
occ:0.54
|
SM
|
A:SM404
|
2.0
|
41.2
|
0.5
|
OE1
|
A:GLU158
|
2.3
|
83.5
|
1.0
|
O
|
E:HOH113
|
2.3
|
69.8
|
1.0
|
O
|
A:HOH525
|
2.7
|
53.4
|
1.0
|
OE1
|
A:GLU160
|
3.1
|
63.2
|
1.0
|
OD1
|
A:ASP86
|
3.1
|
48.9
|
1.0
|
OD2
|
A:ASP86
|
3.1
|
54.7
|
1.0
|
CG
|
A:ASP86
|
3.4
|
49.8
|
1.0
|
CD
|
A:GLU158
|
3.4
|
90.3
|
1.0
|
HZ3
|
A:LYS93
|
3.4
|
0.1
|
1.0
|
O
|
E:HOH103
|
3.6
|
73.7
|
1.0
|
H
|
A:ALA159
|
3.7
|
40.8
|
1.0
|
O
|
A:HOH689
|
3.8
|
81.1
|
1.0
|
HZ1
|
A:LYS93
|
3.8
|
0.1
|
1.0
|
OE2
|
A:GLU158
|
3.8
|
0.5
|
1.0
|
HZ2
|
A:LYS93
|
3.9
|
0.1
|
1.0
|
NZ
|
A:LYS93
|
3.9
|
92.6
|
1.0
|
HA
|
A:GLU158
|
3.9
|
56.4
|
1.0
|
CD
|
A:GLU160
|
3.9
|
80.7
|
1.0
|
OP3
|
E:DT7
|
4.1
|
66.4
|
1.0
|
OE2
|
A:GLU160
|
4.1
|
71.2
|
1.0
|
OP2
|
E:DT7
|
4.2
|
73.3
|
1.0
|
HB3
|
A:GLU158
|
4.3
|
57.0
|
1.0
|
O
|
G:HOH101
|
4.3
|
59.2
|
1.0
|
H
|
A:GLU160
|
4.4
|
41.4
|
1.0
|
N
|
A:ALA159
|
4.4
|
34.0
|
1.0
|
HB3
|
A:ALA159
|
4.5
|
43.2
|
1.0
|
OP1
|
G:DT6
|
4.5
|
91.8
|
0.5
|
H73
|
E:DT7
|
4.6
|
91.2
|
1.0
|
CG
|
A:GLU158
|
4.6
|
68.8
|
1.0
|
CA
|
A:GLU158
|
4.7
|
47.0
|
1.0
|
CB
|
A:GLU158
|
4.7
|
47.5
|
1.0
|
CB
|
A:ASP86
|
4.8
|
41.6
|
1.0
|
OD1
|
A:ASP34
|
4.8
|
57.2
|
1.0
|
HB3
|
A:ASP86
|
4.8
|
49.9
|
1.0
|
P
|
E:DT7
|
4.9
|
73.2
|
1.0
|
|
Samarium binding site 3 out
of 8 in 5k97
Go back to
Samarium Binding Sites List in 5k97
Samarium binding site 3 out
of 8 in the Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+
![](/pictures/SM/pdb/k9/5k97-SM-sphere_03.jpg) Mono view
![](/pictures/SM/pdb/k9/5k97-SM-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Samarium with other atoms in the Sm binding
site number 3 of Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sm403
b:45.5
occ:0.59
|
HB3
|
A:ASP179
|
2.0
|
73.5
|
1.0
|
OD2
|
A:ASP179
|
2.3
|
96.2
|
1.0
|
OD1
|
A:ASP181
|
2.3
|
73.7
|
1.0
|
CB
|
A:ASP179
|
2.3
|
61.2
|
1.0
|
OP1
|
E:DT7
|
2.3
|
90.0
|
1.0
|
CG
|
A:ASP179
|
2.3
|
93.1
|
1.0
|
HB2
|
A:ASP179
|
2.3
|
73.5
|
1.0
|
OE2
|
A:GLU160
|
2.3
|
71.2
|
1.0
|
SM
|
A:SM401
|
2.5
|
58.7
|
0.6
|
OP3
|
E:DT7
|
2.7
|
66.4
|
1.0
|
P
|
E:DT7
|
3.1
|
73.2
|
1.0
|
CG
|
A:ASP181
|
3.1
|
83.2
|
1.0
|
HB2
|
A:ASP181
|
3.2
|
77.4
|
1.0
|
OD1
|
A:ASP179
|
3.2
|
97.7
|
1.0
|
CD
|
A:GLU160
|
3.4
|
80.7
|
1.0
|
H5'
|
E:DT7
|
3.5
|
0.9
|
1.0
|
HG2
|
A:GLU160
|
3.7
|
82.9
|
1.0
|
CB
|
A:ASP181
|
3.7
|
64.5
|
1.0
|
CA
|
A:ASP179
|
3.8
|
75.1
|
1.0
|
H
|
A:ASP181
|
3.9
|
60.3
|
1.0
|
N
|
A:GLY2
|
3.9
|
54.8
|
1.0
|
O
|
A:HOH554
|
3.9
|
65.2
|
1.0
|
HA2
|
A:GLY2
|
4.0
|
66.8
|
1.0
|
OD2
|
A:ASP181
|
4.0
|
88.4
|
1.0
|
SM
|
A:SM404
|
4.0
|
41.2
|
0.5
|
O5'
|
E:DT7
|
4.1
|
77.9
|
1.0
|
C5'
|
E:DT7
|
4.1
|
89.1
|
1.0
|
CG
|
A:GLU160
|
4.1
|
69.1
|
1.0
|
HA
|
A:ASP179
|
4.2
|
90.1
|
1.0
|
H5''
|
E:DT7
|
4.2
|
0.9
|
1.0
|
HE3
|
A:MET37
|
4.2
|
0.8
|
1.0
|
O
|
E:HOH103
|
4.3
|
73.7
|
1.0
|
HB3
|
A:ASP181
|
4.3
|
77.4
|
1.0
|
OP2
|
E:DT7
|
4.3
|
73.3
|
1.0
|
OE1
|
A:GLU160
|
4.4
|
63.2
|
1.0
|
CA
|
A:GLY2
|
4.4
|
55.7
|
1.0
|
H22
|
A:EDO410
|
4.5
|
88.2
|
1.0
|
C
|
A:ASP179
|
4.5
|
76.7
|
1.0
|
H
|
A:ASP179
|
4.5
|
85.2
|
1.0
|
O
|
A:HOH689
|
4.6
|
81.1
|
1.0
|
N
|
A:ASP181
|
4.6
|
50.3
|
1.0
|
N
|
A:ASP179
|
4.7
|
71.0
|
1.0
|
HG3
|
A:GLU160
|
4.7
|
82.9
|
1.0
|
HA3
|
A:GLY2
|
4.7
|
66.8
|
1.0
|
HG1
|
A:THR177
|
4.8
|
0.7
|
1.0
|
CA
|
A:ASP181
|
4.8
|
51.6
|
1.0
|
O
|
A:ASP179
|
4.8
|
73.9
|
1.0
|
HE2
|
A:MET37
|
4.9
|
0.8
|
1.0
|
CE
|
A:MET37
|
4.9
|
99.9
|
1.0
|
HE1
|
A:MET37
|
5.0
|
0.8
|
1.0
|
|
Samarium binding site 4 out
of 8 in 5k97
Go back to
Samarium Binding Sites List in 5k97
Samarium binding site 4 out
of 8 in the Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+
![](/pictures/SM/pdb/k9/5k97-SM-sphere_04.jpg) Mono view
![](/pictures/SM/pdb/k9/5k97-SM-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Samarium with other atoms in the Sm binding
site number 4 of Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sm404
b:41.2
occ:0.52
|
SM
|
A:SM402
|
2.0
|
88.2
|
0.5
|
OE1
|
A:GLU160
|
2.3
|
63.2
|
1.0
|
OP3
|
E:DT7
|
2.3
|
66.4
|
1.0
|
O
|
E:HOH113
|
2.3
|
69.8
|
1.0
|
O
|
E:HOH103
|
2.3
|
73.7
|
1.0
|
OE2
|
A:GLU160
|
2.3
|
71.2
|
1.0
|
CD
|
A:GLU160
|
2.6
|
80.7
|
1.0
|
O
|
A:HOH525
|
2.9
|
53.4
|
1.0
|
O
|
A:HOH689
|
3.2
|
81.1
|
1.0
|
OP2
|
E:DT7
|
3.3
|
73.3
|
1.0
|
P
|
E:DT7
|
3.3
|
73.2
|
1.0
|
OE1
|
A:GLU158
|
3.4
|
83.5
|
1.0
|
SM
|
A:SM401
|
3.5
|
58.7
|
0.6
|
HZ1
|
A:LYS93
|
3.9
|
0.1
|
1.0
|
OD1
|
A:ASP34
|
3.9
|
57.2
|
1.0
|
CG
|
A:GLU160
|
4.0
|
69.1
|
1.0
|
SM
|
A:SM403
|
4.0
|
45.5
|
0.6
|
OP1
|
E:DT7
|
4.1
|
90.0
|
1.0
|
HG3
|
A:GLU160
|
4.2
|
82.9
|
1.0
|
HZ3
|
A:LYS93
|
4.2
|
0.1
|
1.0
|
HZ2
|
A:LYS93
|
4.3
|
0.1
|
1.0
|
NZ
|
A:LYS93
|
4.3
|
92.6
|
1.0
|
H73
|
E:DT7
|
4.3
|
91.2
|
1.0
|
H
|
A:GLU160
|
4.4
|
41.4
|
1.0
|
OD2
|
A:ASP86
|
4.4
|
54.7
|
1.0
|
HG2
|
A:GLU160
|
4.5
|
82.9
|
1.0
|
HE2
|
A:MET37
|
4.5
|
0.8
|
1.0
|
CD
|
A:GLU158
|
4.6
|
90.3
|
1.0
|
OD1
|
A:ASP86
|
4.6
|
48.9
|
1.0
|
O5'
|
E:DT7
|
4.6
|
77.9
|
1.0
|
HB2
|
A:GLU160
|
4.6
|
46.0
|
1.0
|
O
|
A:HOH554
|
4.8
|
65.2
|
1.0
|
H
|
A:ALA159
|
4.9
|
40.8
|
1.0
|
CB
|
A:GLU160
|
4.9
|
38.3
|
1.0
|
OD2
|
A:ASP179
|
4.9
|
96.2
|
1.0
|
CG
|
A:ASP86
|
4.9
|
49.8
|
1.0
|
HB3
|
A:ALA159
|
5.0
|
43.2
|
1.0
|
CG
|
A:ASP34
|
5.0
|
49.0
|
1.0
|
HB3
|
A:GLU158
|
5.0
|
57.0
|
1.0
|
|
Samarium binding site 5 out
of 8 in 5k97
Go back to
Samarium Binding Sites List in 5k97
Samarium binding site 5 out
of 8 in the Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+
![](/pictures/SM/pdb/k9/5k97-SM-sphere_05.jpg) Mono view
![](/pictures/SM/pdb/k9/5k97-SM-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Samarium with other atoms in the Sm binding
site number 5 of Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sm406
b:37.6
occ:1.00
|
OE2
|
A:GLU57
|
2.3
|
59.1
|
1.0
|
OE1
|
A:GLU313
|
2.4
|
37.5
|
1.0
|
O
|
A:HOH588
|
2.4
|
36.2
|
1.0
|
OE1
|
A:GLU57
|
2.4
|
58.2
|
1.0
|
CD
|
A:GLU57
|
2.6
|
46.3
|
1.0
|
CD
|
A:GLU313
|
3.3
|
37.3
|
1.0
|
OE2
|
A:GLU313
|
3.5
|
49.5
|
1.0
|
HA
|
A:GLU313
|
3.9
|
45.0
|
1.0
|
CG
|
A:GLU57
|
4.0
|
49.5
|
1.0
|
HG3
|
A:GLU57
|
4.1
|
59.4
|
1.0
|
SM
|
A:SM407
|
4.1
|
38.5
|
1.0
|
O
|
A:HOH743
|
4.2
|
69.0
|
1.0
|
HG2
|
A:GLU57
|
4.4
|
59.4
|
1.0
|
O
|
A:GLU313
|
4.5
|
34.6
|
1.0
|
CG
|
A:GLU313
|
4.7
|
41.0
|
1.0
|
CA
|
A:GLU313
|
4.8
|
37.5
|
1.0
|
O
|
A:HOH549
|
4.8
|
46.7
|
1.0
|
HB2
|
A:GLU313
|
4.9
|
40.1
|
1.0
|
HB2
|
A:GLU57
|
4.9
|
63.5
|
1.0
|
|
Samarium binding site 6 out
of 8 in 5k97
Go back to
Samarium Binding Sites List in 5k97
Samarium binding site 6 out
of 8 in the Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+
![](/pictures/SM/pdb/k9/5k97-SM-sphere_06.jpg) Mono view
![](/pictures/SM/pdb/k9/5k97-SM-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Samarium with other atoms in the Sm binding
site number 6 of Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sm407
b:38.5
occ:1.00
|
OE2
|
A:GLU59
|
2.3
|
43.1
|
1.0
|
OE2
|
A:GLU313
|
2.3
|
49.5
|
1.0
|
OE1
|
A:GLU59
|
2.6
|
36.7
|
1.0
|
CD
|
A:GLU59
|
2.8
|
37.9
|
1.0
|
OE1
|
A:GLU57
|
2.9
|
58.2
|
1.0
|
CD
|
A:GLU313
|
3.4
|
37.3
|
1.0
|
HZ2
|
A:LYS314
|
3.8
|
49.6
|
1.0
|
CD
|
A:GLU57
|
3.8
|
46.3
|
1.0
|
OE1
|
A:GLU313
|
3.9
|
37.5
|
1.0
|
HD21
|
A:ASN55
|
3.9
|
46.6
|
1.0
|
SM
|
A:SM406
|
4.1
|
37.6
|
1.0
|
O
|
A:HOH562
|
4.2
|
55.0
|
1.0
|
CG
|
A:GLU59
|
4.3
|
39.6
|
1.0
|
OE2
|
A:GLU57
|
4.3
|
59.1
|
1.0
|
HB2
|
A:GLU57
|
4.4
|
63.5
|
1.0
|
CG
|
A:GLU313
|
4.5
|
41.0
|
1.0
|
HG2
|
A:GLU313
|
4.5
|
49.2
|
1.0
|
HG3
|
A:GLU59
|
4.5
|
47.6
|
1.0
|
HB3
|
A:GLU57
|
4.6
|
63.5
|
1.0
|
O
|
A:HOH830
|
4.6
|
70.6
|
1.0
|
NZ
|
A:LYS314
|
4.6
|
41.3
|
1.0
|
HZ3
|
A:LYS314
|
4.6
|
49.6
|
1.0
|
HG2
|
A:GLU59
|
4.7
|
47.6
|
1.0
|
HG3
|
A:GLU313
|
4.7
|
49.2
|
1.0
|
ND2
|
A:ASN55
|
4.7
|
38.9
|
1.0
|
CB
|
A:GLU57
|
4.8
|
52.9
|
1.0
|
HD22
|
A:ASN55
|
4.9
|
46.6
|
1.0
|
CG
|
A:GLU57
|
4.9
|
49.5
|
1.0
|
HB2
|
A:GLU59
|
5.0
|
52.7
|
1.0
|
|
Samarium binding site 7 out
of 8 in 5k97
Go back to
Samarium Binding Sites List in 5k97
Samarium binding site 7 out
of 8 in the Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+
![](/pictures/SM/pdb/k9/5k97-SM-sphere_07.jpg) Mono view
![](/pictures/SM/pdb/k9/5k97-SM-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Samarium with other atoms in the Sm binding
site number 7 of Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sm408
b:0.4
occ:0.55
|
O
|
A:HOH803
|
2.3
|
84.4
|
1.0
|
OD2
|
A:ASP51
|
2.9
|
0.3
|
1.0
|
O
|
A:GLY49
|
3.0
|
83.0
|
1.0
|
O
|
A:HOH724
|
3.1
|
77.8
|
1.0
|
OD1
|
A:ASP51
|
3.1
|
0.1
|
1.0
|
CG
|
A:ASP51
|
3.3
|
0.7
|
1.0
|
C
|
A:GLY49
|
4.2
|
80.1
|
1.0
|
HA3
|
A:GLY50
|
4.2
|
99.1
|
1.0
|
O
|
A:HOH503
|
4.6
|
72.3
|
1.0
|
CB
|
A:ASP51
|
4.6
|
82.3
|
1.0
|
N
|
A:ASP51
|
4.7
|
73.6
|
1.0
|
C
|
A:GLY50
|
4.7
|
73.0
|
1.0
|
H
|
A:ASP51
|
4.7
|
88.3
|
1.0
|
O
|
A:HOH937
|
4.7
|
80.5
|
1.0
|
HB2
|
A:ASP51
|
4.7
|
98.8
|
1.0
|
CA
|
A:GLY50
|
4.8
|
82.5
|
1.0
|
HA3
|
A:GLY49
|
4.9
|
94.1
|
1.0
|
N
|
A:GLY50
|
5.0
|
81.0
|
1.0
|
|
Samarium binding site 8 out
of 8 in 5k97
Go back to
Samarium Binding Sites List in 5k97
Samarium binding site 8 out
of 8 in the Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+
![](/pictures/SM/pdb/k9/5k97-SM-sphere_08.jpg) Mono view
![](/pictures/SM/pdb/k9/5k97-SM-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Samarium with other atoms in the Sm binding
site number 8 of Flap Endonuclease 1 (FEN1) D233N with Cleaved Product Fragment and SM3+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sm409
b:0.8
occ:1.00
|
O
|
A:HOH545
|
2.3
|
0.6
|
1.0
|
O
|
A:HOH901
|
2.9
|
0.4
|
1.0
|
O
|
A:HOH848
|
3.3
|
0.1
|
1.0
|
OE2
|
A:GLU102
|
3.4
|
0.9
|
1.0
|
HG2
|
A:LYS99
|
3.6
|
0.9
|
1.0
|
OE1
|
A:GLU102
|
3.7
|
0.3
|
1.0
|
CD
|
A:GLU102
|
3.9
|
0.1
|
1.0
|
HD3
|
A:LYS99
|
4.3
|
1.0
|
1.0
|
CG
|
A:LYS99
|
4.5
|
0.5
|
1.0
|
O
|
A:HOH711
|
4.6
|
83.4
|
1.0
|
CD
|
A:LYS99
|
4.8
|
0.5
|
1.0
|
HG3
|
A:LYS99
|
4.8
|
0.9
|
1.0
|
HD2
|
A:LYS99
|
4.9
|
1.0
|
1.0
|
HA
|
A:LYS99
|
5.0
|
0.3
|
1.0
|
|
Reference:
S.E.Tsutakawa,
M.J.Thompson,
A.S.Arvai,
A.J.Neil,
S.J.Shaw,
S.I.Algasaier,
J.C.Kim,
L.D.Finger,
E.Jardine,
V.J.B.Gotham,
A.H.Sarker,
M.Z.Her,
F.Rashid,
S.M.Hamdan,
S.M.Mirkin,
J.A.Grasby,
J.A.Tainer.
Phosphate Steering By Flap Endonuclease 1 Promotes 5'-Flap Specificity and Incision to Prevent Genome Instability. Nat Commun V. 8 15855 2017.
ISSN: ESSN 2041-1723
PubMed: 28653660
DOI: 10.1038/NCOMMS15855
Page generated: Wed Dec 16 02:10:03 2020
|