Atomistry » Samarium » PDB 1a3c-5ktj » 4zhh
Atomistry »
  Samarium »
    PDB 1a3c-5ktj »
      4zhh »

Samarium in PDB 4zhh: Siderocalin-Mediated Recognition and Cellular Uptake of Actinides

Protein crystallography data

The structure of Siderocalin-Mediated Recognition and Cellular Uptake of Actinides, PDB code: 4zhh was solved by B.E.Allred, P.B.Rupert, S.S.Gauny, D.D.An, C.Y.Ralston, M.Sturzbecher-Hoehne, R.K.Strong, R.J.Abergel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.04
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.683, 115.320, 120.517, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 19.9

Other elements in 4zhh:

The structure of Siderocalin-Mediated Recognition and Cellular Uptake of Actinides also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Samarium Binding Sites:

The binding sites of Samarium atom in the Siderocalin-Mediated Recognition and Cellular Uptake of Actinides (pdb code 4zhh). This binding sites where shown within 5.0 Angstroms radius around Samarium atom.
In total 6 binding sites of Samarium where determined in the Siderocalin-Mediated Recognition and Cellular Uptake of Actinides, PDB code: 4zhh:
Jump to Samarium binding site number: 1; 2; 3; 4; 5; 6;

Samarium binding site 1 out of 6 in 4zhh

Go back to Samarium Binding Sites List in 4zhh
Samarium binding site 1 out of 6 in the Siderocalin-Mediated Recognition and Cellular Uptake of Actinides


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 1 of Siderocalin-Mediated Recognition and Cellular Uptake of Actinides within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sm201

b:23.6
occ:1.00
 O10 A:4OL202 2.0 21.2 1.0
O48 A:4OL202 2.1 24.6 1.0
O50 A:4OL202 2.3 34.2 1.0
O51 A:4OL202 2.4 32.9 1.0
O46 A:4OL202 2.4 24.5 1.0
O47 A:4OL202 2.5 18.4 1.0
O49 A:4OL202 2.5 20.8 1.0
O9 A:4OL202 2.5 20.0 1.0
N3 A:4OL202 3.0 19.6 1.0
N27 A:4OL202 3.1 22.0 1.0
C4 A:4OL202 3.1 16.7 1.0
C26 A:4OL202 3.2 23.3 1.0
N45 A:4OL202 3.2 30.3 1.0
C44 A:4OL202 3.2 33.2 1.0
N35 A:4OL202 3.2 18.6 1.0
C36 A:4OL202 3.2 20.2 1.0
O A:HOH372 4.0 40.0 1.0
O A:HOH339 4.0 19.9 1.0
C2 A:4OL202 4.3 20.3 1.0
C22 A:4OL202 4.4 23.9 1.0
C5 A:4OL202 4.5 20.8 1.0
OH A:TYR106 4.5 21.6 1.0
C37 A:4OL202 4.5 17.7 1.0
C43 A:4OL202 4.5 34.6 1.0
C40 A:4OL202 4.5 31.3 1.0
C25 A:4OL202 4.6 28.8 1.0
C34 A:4OL202 4.6 19.8 1.0
NZ A:LYS125 4.6 30.7 1.0
NZ A:LYS134 4.6 22.8 1.0
N9 A:4OL202 4.7 23.0 1.0
C29 A:4OL202 4.8 23.0 1.0
C14 A:4OL202 4.8 27.7 1.0
CZ3 A:TRP79 4.8 22.4 1.0
N32 A:4OL202 4.9 32.8 1.0
C1 A:4OL202 4.9 24.5 1.0
CH2 A:TRP79 5.0 26.3 1.0

Samarium binding site 2 out of 6 in 4zhh

Go back to Samarium Binding Sites List in 4zhh
Samarium binding site 2 out of 6 in the Siderocalin-Mediated Recognition and Cellular Uptake of Actinides


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 2 of Siderocalin-Mediated Recognition and Cellular Uptake of Actinides within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sm201

b:21.0
occ:1.00
 O10 B:4OL202 1.9 18.6 1.0
O48 B:4OL202 2.2 22.8 1.0
O50 B:4OL202 2.3 26.9 1.0
O51 B:4OL202 2.4 23.1 1.0
O47 B:4OL202 2.4 18.4 1.0
O46 B:4OL202 2.4 21.9 1.0
O49 B:4OL202 2.5 18.9 1.0
O9 B:4OL202 2.5 19.5 1.0
N3 B:4OL202 2.9 18.6 1.0
C4 B:4OL202 3.1 18.2 1.0
N27 B:4OL202 3.1 22.9 1.0
C36 B:4OL202 3.2 17.7 1.0
N35 B:4OL202 3.2 14.7 1.0
C26 B:4OL202 3.2 22.0 1.0
N45 B:4OL202 3.2 24.2 1.0
C44 B:4OL202 3.2 25.3 1.0
O B:HOH340 4.0 20.4 1.0
O B:HOH319 4.1 32.7 1.0
C2 B:4OL202 4.2 19.1 1.0
C5 B:4OL202 4.4 23.9 1.0
OH B:TYR106 4.5 22.5 1.0
C22 B:4OL202 4.5 23.4 1.0
NZ B:LYS125 4.5 27.9 1.0
C37 B:4OL202 4.5 16.9 1.0
C25 B:4OL202 4.5 27.0 1.0
NZ B:LYS134 4.5 20.2 1.0
C43 B:4OL202 4.5 25.5 1.0
C40 B:4OL202 4.5 27.3 1.0
C34 B:4OL202 4.6 14.5 1.0
N9 B:4OL202 4.6 25.5 1.0
N32 B:4OL202 4.8 25.4 1.0
C1 B:4OL202 4.8 26.3 1.0
C29 B:4OL202 4.9 21.6 1.0
C14 B:4OL202 4.9 23.4 1.0
CZ3 B:TRP79 4.9 19.1 1.0

Samarium binding site 3 out of 6 in 4zhh

Go back to Samarium Binding Sites List in 4zhh
Samarium binding site 3 out of 6 in the Siderocalin-Mediated Recognition and Cellular Uptake of Actinides


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 3 of Siderocalin-Mediated Recognition and Cellular Uptake of Actinides within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Sm201

b:20.1
occ:1.00
 O10 C:4OL202 2.1 19.2 1.0
O51 C:4OL202 2.2 23.5 1.0
O50 C:4OL202 2.3 23.0 1.0
O47 C:4OL202 2.4 14.9 1.0
O48 C:4OL202 2.4 26.2 1.0
O46 C:4OL202 2.4 23.7 1.0
O9 C:4OL202 2.5 16.2 1.0
O49 C:4OL202 2.5 25.4 1.0
N3 C:4OL202 3.0 17.0 1.0
C44 C:4OL202 3.1 24.0 1.0
C4 C:4OL202 3.1 14.7 1.0
C36 C:4OL202 3.2 17.7 1.0
N27 C:4OL202 3.2 23.8 1.0
N45 C:4OL202 3.2 20.1 1.0
C26 C:4OL202 3.2 22.1 1.0
N35 C:4OL202 3.2 18.3 1.0
O C:HOH301 3.7 44.8 1.0
O C:HOH342 4.0 16.1 1.0
C2 C:4OL202 4.3 16.9 1.0
C43 C:4OL202 4.4 25.9 1.0
C5 C:4OL202 4.5 15.2 1.0
C22 C:4OL202 4.5 24.8 1.0
C37 C:4OL202 4.5 18.4 1.0
OH C:TYR106 4.5 19.2 1.0
NZ C:LYS134 4.5 15.7 1.0
C40 C:4OL202 4.5 27.1 1.0
C25 C:4OL202 4.5 24.0 1.0
NZ C:LYS125 4.6 25.2 1.0
C34 C:4OL202 4.6 20.9 1.0
N9 C:4OL202 4.7 19.6 1.0
C14 C:4OL202 4.8 24.8 1.0
C29 C:4OL202 4.8 18.5 1.0
N32 C:4OL202 4.8 22.2 1.0
CZ3 C:TRP79 4.9 17.6 1.0
C1 C:4OL202 5.0 22.3 1.0

Samarium binding site 4 out of 6 in 4zhh

Go back to Samarium Binding Sites List in 4zhh
Samarium binding site 4 out of 6 in the Siderocalin-Mediated Recognition and Cellular Uptake of Actinides


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 4 of Siderocalin-Mediated Recognition and Cellular Uptake of Actinides within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Sm201

b:27.0
occ:1.00
 O48 D:4OL202 2.0 27.8 1.0
O51 D:4OL202 2.2 29.5 1.0
O10 D:4OL202 2.2 23.5 1.0
O50 D:4OL202 2.3 39.6 1.0
O46 D:4OL202 2.4 27.9 1.0
O9 D:4OL202 2.4 25.9 1.0
O47 D:4OL202 2.5 25.1 1.0
O49 D:4OL202 2.5 22.1 1.0
N3 D:4OL202 2.9 19.5 1.0
C4 D:4OL202 3.0 22.8 1.0
C44 D:4OL202 3.1 31.4 1.0
N27 D:4OL202 3.1 29.2 1.0
N45 D:4OL202 3.1 28.5 1.0
N35 D:4OL202 3.1 23.8 1.0
C36 D:4OL202 3.2 20.3 1.0
C26 D:4OL202 3.2 26.4 1.0
O D:HOH338 3.9 41.0 1.0
O D:HOH319 4.0 21.0 1.0
C2 D:4OL202 4.2 24.8 1.0
C5 D:4OL202 4.3 25.8 1.0
C43 D:4OL202 4.4 36.1 1.0
C22 D:4OL202 4.4 27.9 1.0
OH D:TYR106 4.4 23.3 1.0
NZ D:LYS134 4.5 22.1 1.0
C34 D:4OL202 4.5 24.8 1.0
C40 D:4OL202 4.5 35.1 1.0
C37 D:4OL202 4.5 22.3 1.0
NZ D:LYS125 4.6 31.8 1.0
C25 D:4OL202 4.6 29.3 1.0
C14 D:4OL202 4.7 32.9 1.0
N9 D:4OL202 4.7 25.9 1.0
C29 D:4OL202 4.7 26.4 1.0
CZ3 D:TRP79 4.8 26.9 1.0
N32 D:4OL202 4.8 31.0 1.0
C1 D:4OL202 4.9 28.6 1.0

Samarium binding site 5 out of 6 in 4zhh

Go back to Samarium Binding Sites List in 4zhh
Samarium binding site 5 out of 6 in the Siderocalin-Mediated Recognition and Cellular Uptake of Actinides


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 5 of Siderocalin-Mediated Recognition and Cellular Uptake of Actinides within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Sm201

b:24.3
occ:1.00
 O50 E:4OL202 2.1 31.9 1.0
O10 E:4OL202 2.1 29.1 1.0
O49 E:4OL202 2.3 26.2 1.0
O51 E:4OL202 2.4 22.6 1.0
O46 E:4OL202 2.4 25.6 1.0
O47 E:4OL202 2.4 22.7 1.0
O48 E:4OL202 2.5 29.9 1.0
O9 E:4OL202 2.5 17.1 1.0
N3 E:4OL202 3.0 19.2 1.0
C4 E:4OL202 3.1 19.6 1.0
N45 E:4OL202 3.1 26.7 1.0
C44 E:4OL202 3.1 28.2 1.0
C26 E:4OL202 3.1 27.3 1.0
C36 E:4OL202 3.2 19.2 1.0
N27 E:4OL202 3.2 23.5 1.0
N35 E:4OL202 3.2 20.1 1.0
O E:HOH321 4.1 24.6 1.0
C2 E:4OL202 4.3 24.0 1.0
C5 E:4OL202 4.4 19.1 1.0
C25 E:4OL202 4.4 32.4 1.0
C40 E:4OL202 4.5 31.2 1.0
C43 E:4OL202 4.5 29.5 1.0
OH E:TYR106 4.5 20.9 1.0
NZ E:LYS125 4.5 31.0 1.0
C37 E:4OL202 4.5 16.3 1.0
C22 E:4OL202 4.5 29.8 1.0
C34 E:4OL202 4.6 19.6 1.0
NZ E:LYS134 4.6 23.0 1.0
N9 E:4OL202 4.7 26.7 1.0
N32 E:4OL202 4.8 32.2 1.0
C29 E:4OL202 4.8 24.9 1.0
CZ3 E:TRP79 4.9 25.0 1.0
C14 E:4OL202 4.9 30.1 1.0
C1 E:4OL202 4.9 27.7 1.0

Samarium binding site 6 out of 6 in 4zhh

Go back to Samarium Binding Sites List in 4zhh
Samarium binding site 6 out of 6 in the Siderocalin-Mediated Recognition and Cellular Uptake of Actinides


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 6 of Siderocalin-Mediated Recognition and Cellular Uptake of Actinides within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Sm201

b:23.0
occ:1.00
 O10 F:4OL202 1.9 22.1 1.0
O50 F:4OL202 2.1 26.6 1.0
O48 F:4OL202 2.3 32.1 1.0
O9 F:4OL202 2.4 15.2 1.0
O51 F:4OL202 2.5 21.0 1.0
O47 F:4OL202 2.5 28.7 1.0
O49 F:4OL202 2.5 22.2 1.0
O46 F:4OL202 2.6 25.3 1.0
N3 F:4OL202 2.9 25.6 1.0
C4 F:4OL202 3.0 19.7 1.0
N45 F:4OL202 3.1 29.2 1.0
N27 F:4OL202 3.2 29.8 1.0
C44 F:4OL202 3.2 25.1 1.0
C26 F:4OL202 3.2 27.3 1.0
C36 F:4OL202 3.3 26.0 1.0
N35 F:4OL202 3.3 24.8 1.0
O F:HOH303 4.0 41.5 1.0
O F:HOH314 4.1 21.5 1.0
C2 F:4OL202 4.2 20.7 1.0
C5 F:4OL202 4.4 20.0 1.0
C40 F:4OL202 4.5 26.2 1.0
OH F:TYR106 4.5 22.6 1.0
C22 F:4OL202 4.5 28.6 1.0
C25 F:4OL202 4.6 27.2 1.0
C43 F:4OL202 4.6 23.7 1.0
NZ F:LYS134 4.6 21.2 1.0
NZ F:LYS125 4.6 31.2 1.0
C37 F:4OL202 4.6 24.8 1.0
N9 F:4OL202 4.6 26.8 1.0
C34 F:4OL202 4.7 27.4 1.0
N32 F:4OL202 4.8 28.8 1.0
C29 F:4OL202 4.8 28.9 1.0
C14 F:4OL202 4.8 31.1 1.0
CZ3 F:TRP79 4.9 23.5 1.0
C1 F:4OL202 4.9 28.5 1.0

Reference:

B.E.Allred, P.B.Rupert, S.S.Gauny, D.D.An, C.Y.Ralston, M.Sturzbecher-Hoehne, R.K.Strong, R.J.Abergel. Siderocalin-Mediated Recognition, Sensitization, and Cellular Uptake of Actinides. Proc.Natl.Acad.Sci.Usa V. 112 10342 2015.
ISSN: ESSN 1091-6490
PubMed: 26240330
DOI: 10.1073/PNAS.1508902112
Page generated: Thu Oct 10 13:52:44 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy