Samarium in PDB 2x3l: Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus

The structure of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus, PDB code: 2x3l was solved by M.Oke, L.G.Carter, K.A.Johnson, H.Liu, S.A.Mcmahon, M.F.White, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.17 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	50.677, 137.283, 62.258, 90.00, 109.64, 90.00
R / Rfree (%)	22.886 / 27.684

The binding sites of Samarium atom in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus (pdb code 2x3l). This binding sites where shown within 5.0 Angstroms radius around Samarium atom.
In total 7 binding sites of Samarium where determined in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus, PDB code: 2x3l:
Jump to Samarium binding site number: 1; 2; 3; 4; 5; 6; 7;

Samarium binding site 1 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 1 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Sm1445 b:55.1 occ:1.00 OE2 A:GLU417 1.8 32.6 1.0 CD A:GLU417 3.0 30.9 1.0 OE1 A:GLU417 3.6 33.4 1.0 CG A:GLU417 4.3 28.0 1.0 CB A:GLU417 4.8 25.3 1.0 SM A:SM1446 4.9 50.5 1.0

Samarium binding site 2 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 2 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Sm1446 b:50.5 occ:1.00 OE1 A:GLU421 1.8 29.6 1.0 O A:HOH2068 2.0 4.0 1.0 OD1 A:ASN418 2.7 27.5 1.0 CD A:GLU421 2.9 28.6 1.0 OE2 A:GLU421 3.2 30.9 1.0 CG A:ASN418 3.9 26.2 1.0 CG A:GLU421 4.3 25.7 1.0 CB A:GLU417 4.6 25.3 1.0 ND2 A:ASN418 4.6 27.3 1.0 OE2 A:GLU417 4.8 32.6 1.0 SM A:SM1445 4.9 55.1 1.0 N A:ASN418 4.9 23.8 1.0 CA A:ASN418 4.9 23.7 1.0

Samarium binding site 3 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 3 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Sm1447 b:29.0 occ:1.00 OE2 A:GLU428 1.8 31.0 1.0 OE2 A:GLU425 1.8 30.7 1.0 CD A:GLU425 2.7 29.1 1.0 CD A:GLU428 2.8 32.5 1.0 OE1 A:GLU425 3.0 29.7 1.0 OE1 A:GLU428 3.2 34.3 1.0 CG A:GLU425 4.2 27.2 1.0 CG A:GLU428 4.2 32.2 1.0 CB A:GLU428 4.8 30.0 1.0

Samarium binding site 4 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 4 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ A:Sm1448 b:47.9 occ:1.00 OD1 A:ASP351 1.8 61.4 1.0 OD2 A:ASP351 1.8 59.2 1.0 CG A:ASP351 1.9 54.4 1.0 O A:HOH2056 2.1 18.9 1.0 O A:HOH2055 2.1 2.0 1.0 CB A:ASP351 3.5 47.5 1.0 CA A:ASP351 4.2 45.7 1.0 N A:ASP351 4.4 43.1 1.0 OE1 A:GLU350 4.7 44.0 1.0 CB A:GLU350 4.7 40.3 1.0 CD A:ARG347 4.8 40.7 1.0 C A:GLU350 4.9 41.7 1.0

Samarium binding site 5 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 5 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ B:Sm1445 b:90.3 occ:1.00 OE1 B:GLU119 1.8 36.9 1.0 CD B:GLU119 3.0 34.2 1.0 O B:HOH2013 3.4 2.0 1.0 O B:HOH2021 3.4 29.8 1.0 O B:HOH2022 3.5 2.0 1.0 OE2 B:GLU119 3.6 33.5 1.0 ND2 B:ASN373 3.8 36.0 1.0 OD1 B:ASP98 3.9 29.3 1.0 CG B:GLU119 4.2 30.3 1.0 CG B:ASP98 4.6 28.0 1.0 CB B:ASP98 4.9 26.3 1.0 CG B:ASN373 5.0 34.8 1.0

Samarium binding site 6 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 6 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ B:Sm1446 b:80.1 occ:1.00 OE1 B:GLU124 1.8 29.6 1.0 CD B:GLU124 2.7 29.5 1.0 OE2 B:GLU124 3.0 31.3 1.0 CG B:GLU124 4.1 26.4 1.0 ND2 B:ASN138 4.8 39.5 1.0 CB B:GLU124 5.0 24.6 1.0

Samarium binding site 7 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 7 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range: probe atom residue distance (Å) B Occ B:Sm1447 b:63.8 occ:1.00 OE2 B:GLU301 2.6 25.6 1.0 OE1 B:GLU301 2.7 28.1 1.0 CD B:GLU301 3.0 26.6 1.0 O B:HOH2040 3.1 2.0 1.0 CG B:GLU301 4.4 25.1 1.0 OE1 B:GLU286 4.5 34.3 1.0 CD B:LYS357 4.9 44.3 1.0

M.Oke, L.G.Carter, K.A.Johnson, H.Liu, S.A.Mcmahon, X.Yan, M.Kerou, N.D.Weikart, N.Kadi, M.A.Sheikh, S.Schmelz, M.Dorward, M.Zawadzki, C.Cozens, H.Falconer, H.Powers, I.M.Overton, C.A.J.Van Niekerk, X.Peng, P.Patel, R.A.Garrett, D.Prangishvili, C.H.Botting, P.J.Coote, D.T.F.Dryden, G.J.Barton, U.Schwarz-Linek, G.L.Challis, G.L.Taylor, M.F.White, J.H.Naismith. The Scottish Structural Proteomics Facility: Targets, Methods and Outputs. J.Struct.Funct.Genomics V. 11 167 2010.
ISSN: ISSN 1345-711X
PubMed: 20419351
DOI: 10.1007/S10969-010-9090-Y