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Samarium in PDB 2x3l: Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus

Protein crystallography data

The structure of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus, PDB code: 2x3l was solved by M.Oke, L.G.Carter, K.A.Johnson, H.Liu, S.A.Mcmahon, M.F.White, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.17 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.677, 137.283, 62.258, 90.00, 109.64, 90.00
R / Rfree (%) 22.886 / 27.684

Samarium Binding Sites:

The binding sites of Samarium atom in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus (pdb code 2x3l). This binding sites where shown within 5.0 Angstroms radius around Samarium atom.
In total 7 binding sites of Samarium where determined in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus, PDB code: 2x3l:
Jump to Samarium binding site number: 1; 2; 3; 4; 5; 6; 7;

Samarium binding site 1 out of 7 in 2x3l

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Samarium binding site 1 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 1 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sm1445

b:55.1
occ:1.00
OE2 A:GLU417 1.8 32.6 1.0
CD A:GLU417 3.0 30.9 1.0
OE1 A:GLU417 3.6 33.4 1.0
CG A:GLU417 4.3 28.0 1.0
CB A:GLU417 4.8 25.3 1.0
SM A:SM1446 4.9 50.5 1.0

Samarium binding site 2 out of 7 in 2x3l

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Samarium binding site 2 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 2 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sm1446

b:50.5
occ:1.00
OE1 A:GLU421 1.8 29.6 1.0
O A:HOH2068 2.0 4.0 1.0
OD1 A:ASN418 2.7 27.5 1.0
CD A:GLU421 2.9 28.6 1.0
OE2 A:GLU421 3.2 30.9 1.0
CG A:ASN418 3.9 26.2 1.0
CG A:GLU421 4.3 25.7 1.0
CB A:GLU417 4.6 25.3 1.0
ND2 A:ASN418 4.6 27.3 1.0
OE2 A:GLU417 4.8 32.6 1.0
SM A:SM1445 4.9 55.1 1.0
N A:ASN418 4.9 23.8 1.0
CA A:ASN418 4.9 23.7 1.0

Samarium binding site 3 out of 7 in 2x3l

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Samarium binding site 3 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 3 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sm1447

b:29.0
occ:1.00
OE2 A:GLU428 1.8 31.0 1.0
OE2 A:GLU425 1.8 30.7 1.0
CD A:GLU425 2.7 29.1 1.0
CD A:GLU428 2.8 32.5 1.0
OE1 A:GLU425 3.0 29.7 1.0
OE1 A:GLU428 3.2 34.3 1.0
CG A:GLU425 4.2 27.2 1.0
CG A:GLU428 4.2 32.2 1.0
CB A:GLU428 4.8 30.0 1.0

Samarium binding site 4 out of 7 in 2x3l

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Samarium binding site 4 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 4 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sm1448

b:47.9
occ:1.00
OD1 A:ASP351 1.8 61.4 1.0
OD2 A:ASP351 1.8 59.2 1.0
CG A:ASP351 1.9 54.4 1.0
O A:HOH2056 2.1 18.9 1.0
O A:HOH2055 2.1 2.0 1.0
CB A:ASP351 3.5 47.5 1.0
CA A:ASP351 4.2 45.7 1.0
N A:ASP351 4.4 43.1 1.0
OE1 A:GLU350 4.7 44.0 1.0
CB A:GLU350 4.7 40.3 1.0
CD A:ARG347 4.8 40.7 1.0
C A:GLU350 4.9 41.7 1.0

Samarium binding site 5 out of 7 in 2x3l

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Samarium binding site 5 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 5 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sm1445

b:90.3
occ:1.00
OE1 B:GLU119 1.8 36.9 1.0
CD B:GLU119 3.0 34.2 1.0
O B:HOH2013 3.4 2.0 1.0
O B:HOH2021 3.4 29.8 1.0
O B:HOH2022 3.5 2.0 1.0
OE2 B:GLU119 3.6 33.5 1.0
ND2 B:ASN373 3.8 36.0 1.0
OD1 B:ASP98 3.9 29.3 1.0
CG B:GLU119 4.2 30.3 1.0
CG B:ASP98 4.6 28.0 1.0
CB B:ASP98 4.9 26.3 1.0
CG B:ASN373 5.0 34.8 1.0

Samarium binding site 6 out of 7 in 2x3l

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Samarium binding site 6 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 6 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sm1446

b:80.1
occ:1.00
OE1 B:GLU124 1.8 29.6 1.0
CD B:GLU124 2.7 29.5 1.0
OE2 B:GLU124 3.0 31.3 1.0
CG B:GLU124 4.1 26.4 1.0
ND2 B:ASN138 4.8 39.5 1.0
CB B:GLU124 5.0 24.6 1.0

Samarium binding site 7 out of 7 in 2x3l

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Samarium binding site 7 out of 7 in the Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 7 of Crystal Structure of the ORN_LYS_ARG Decarboxylase Family Protein SAR0482 From Methicillin-Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sm1447

b:63.8
occ:1.00
OE2 B:GLU301 2.6 25.6 1.0
OE1 B:GLU301 2.7 28.1 1.0
CD B:GLU301 3.0 26.6 1.0
O B:HOH2040 3.1 2.0 1.0
CG B:GLU301 4.4 25.1 1.0
OE1 B:GLU286 4.5 34.3 1.0
CD B:LYS357 4.9 44.3 1.0

Reference:

M.Oke, L.G.Carter, K.A.Johnson, H.Liu, S.A.Mcmahon, X.Yan, M.Kerou, N.D.Weikart, N.Kadi, M.A.Sheikh, S.Schmelz, M.Dorward, M.Zawadzki, C.Cozens, H.Falconer, H.Powers, I.M.Overton, C.A.J.Van Niekerk, X.Peng, P.Patel, R.A.Garrett, D.Prangishvili, C.H.Botting, P.J.Coote, D.T.F.Dryden, G.J.Barton, U.Schwarz-Linek, G.L.Challis, G.L.Taylor, M.F.White, J.H.Naismith. The Scottish Structural Proteomics Facility: Targets, Methods and Outputs. J.Struct.Funct.Genomics V. 11 167 2010.
ISSN: ISSN 1345-711X
PubMed: 20419351
DOI: 10.1007/S10969-010-9090-Y
Page generated: Wed Dec 16 02:09:54 2020

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