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Samarium in PDB 2vzy: Crystal Structure of RV0802C From Mycobacterium Tuberculosis in An Unliganded Form.

Protein crystallography data

The structure of Crystal Structure of RV0802C From Mycobacterium Tuberculosis in An Unliganded Form., PDB code: 2vzy was solved by M.W.Vetting, J.C.Errey, J.S.Blanchard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 86.07 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.705, 111.458, 135.238, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 20.5

Samarium Binding Sites:

The binding sites of Samarium atom in the Crystal Structure of RV0802C From Mycobacterium Tuberculosis in An Unliganded Form. (pdb code 2vzy). This binding sites where shown within 5.0 Angstroms radius around Samarium atom.
In total only one binding site of Samarium was determined in the Crystal Structure of RV0802C From Mycobacterium Tuberculosis in An Unliganded Form., PDB code: 2vzy:

Samarium binding site 1 out of 1 in 2vzy

Go back to Samarium Binding Sites List in 2vzy
Samarium binding site 1 out of 1 in the Crystal Structure of RV0802C From Mycobacterium Tuberculosis in An Unliganded Form.


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 1 of Crystal Structure of RV0802C From Mycobacterium Tuberculosis in An Unliganded Form. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Sm1217

b:21.5
occ:1.00
OG2 D:FLC1214 2.5 17.7 1.0
OB2 D:FLC1214 2.5 20.2 1.0
OA1 D:FLC1215 2.5 17.1 1.0
O D:HOH2109 2.5 16.9 1.0
OB2 D:FLC1215 2.5 20.0 1.0
OHB D:FLC1214 2.5 15.9 1.0
OHB D:FLC1215 2.6 18.1 1.0
CBC D:FLC1214 3.3 19.2 1.0
CBC D:FLC1215 3.3 18.5 1.0
CB D:FLC1215 3.4 19.1 1.0
CB D:FLC1214 3.4 19.4 1.0
CAC D:FLC1215 3.5 19.6 1.0
CGC D:FLC1214 3.5 22.7 1.0
CA D:FLC1215 4.0 18.9 1.0
CG D:FLC1214 4.0 17.2 1.0
OG2 D:FLC1215 4.4 23.4 1.0
OD1 D:ASP188 4.4 12.4 1.0
OB1 D:FLC1215 4.5 19.5 1.0
OB1 D:FLC1214 4.5 19.9 1.0
OD2 D:ASP188 4.6 12.1 1.0
CG2 D:THR186 4.6 11.4 1.0
OA2 D:FLC1215 4.6 19.0 1.0
OG1 D:FLC1214 4.6 25.0 1.0
CG D:FLC1215 4.7 20.5 1.0
CA D:FLC1214 4.8 19.2 1.0
OA1 D:FLC1214 4.8 20.8 1.0
NH2 D:ARG184 4.8 15.3 1.0
OG1 D:THR186 4.8 14.0 1.0
CB D:THR186 4.9 12.4 1.0
CG D:ASP188 5.0 13.3 1.0
CGC D:FLC1215 5.0 24.4 1.0

Reference:

M.W.Vetting, J.C.Errey, J.S.Blanchard. RV0802C From Mycobacterium Tuberculosis: the First Structure of A Succinyltransferase with the Gnat Fold. Acta Crystallogr.,Sect.F V. 64 978 2008.
ISSN: ISSN 1744-3091
PubMed: 18997321
DOI: 10.1107/S1744309108031679
Page generated: Wed Dec 16 02:09:53 2020

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