Atomistry » Samarium » PDB 1a3c-5ktj » 1a4z
Atomistry »
  Samarium »
    PDB 1a3c-5ktj »
      1a4z »

Samarium in PDB 1a4z: Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III)

Enzymatic activity of Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III)

All present enzymatic activity of Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III):
1.2.1.3;

Protein crystallography data

The structure of Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III), PDB code: 1a4z was solved by C.G.Steinmetz, T.D.Hurley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 122.600, 198.400, 91.600, 90.00, 90.00, 90.00
R / Rfree (%) 23 / 30.2

Samarium Binding Sites:

The binding sites of Samarium atom in the Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III) (pdb code 1a4z). This binding sites where shown within 5.0 Angstroms radius around Samarium atom.
In total 4 binding sites of Samarium where determined in the Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III), PDB code: 1a4z:
Jump to Samarium binding site number: 1; 2; 3; 4;

Samarium binding site 1 out of 4 in 1a4z

Go back to Samarium Binding Sites List in 1a4z
Samarium binding site 1 out of 4 in the Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III)


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 1 of Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sm502

b:18.6
occ:0.50
 O A:HOH514 2.1 13.4 1.0
O2A A:NAD501 2.4 11.5 1.0
PA A:NAD501 3.9 11.5 1.0
O5B A:NAD501 4.3 11.5 1.0
C8A A:NAD501 4.4 11.5 1.0
O1N A:NAD501 4.5 11.5 1.0
O1A A:NAD501 4.7 11.5 1.0
OE2 A:GLU195 4.8 7.7 1.0
N7A A:NAD501 4.8 11.5 1.0
O3 A:NAD501 4.9 11.5 1.0
NE2 A:GLN196 4.9 7.7 1.0

Samarium binding site 2 out of 4 in 1a4z

Go back to Samarium Binding Sites List in 1a4z
Samarium binding site 2 out of 4 in the Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III)


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 2 of Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sm502

b:19.7
occ:0.45
 O B:HOH514 2.0 13.5 0.5
O2A B:NAD501 2.3 11.2 1.0
PA B:NAD501 3.8 11.2 1.0
O5B B:NAD501 4.3 11.2 1.0
O1A B:NAD501 4.4 11.2 1.0
C8A B:NAD501 4.6 11.2 1.0
N7A B:NAD501 4.9 11.2 1.0
O3 B:NAD501 4.9 11.2 1.0
O1N B:NAD501 5.0 11.2 1.0

Samarium binding site 3 out of 4 in 1a4z

Go back to Samarium Binding Sites List in 1a4z
Samarium binding site 3 out of 4 in the Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III)


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 3 of Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Sm502

b:15.8
occ:0.47
 O C:HOH511 2.0 15.4 0.5
O2A C:NAD501 2.2 12.3 1.0
PA C:NAD501 3.7 12.3 1.0
O5B C:NAD501 4.3 12.3 1.0
O1A C:NAD501 4.4 12.3 1.0
O1N C:NAD501 4.5 12.3 1.0
C8A C:NAD501 4.6 12.3 1.0
O3 C:NAD501 4.8 12.3 1.0
OE1 C:GLN196 4.8 15.7 1.0

Samarium binding site 4 out of 4 in 1a4z

Go back to Samarium Binding Sites List in 1a4z
Samarium binding site 4 out of 4 in the Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III)


Mono view


Stereo pair view

A full contact list of Samarium with other atoms in the Sm binding site number 4 of Aldehyde Dehydrogenase From Bovine Mitochondria Complex with Nad (Reduced) and Samarium (III) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Sm502

b:17.1
occ:0.47
 O D:HOH512 1.9 14.2 0.4
O2A D:NAD501 2.2 12.0 1.0
PA D:NAD501 3.7 12.0 1.0
O5B D:NAD501 4.2 12.0 1.0
O1A D:NAD501 4.3 12.0 1.0
C8A D:NAD501 4.5 12.0 1.0
O1N D:NAD501 4.6 12.0 1.0
O3 D:NAD501 4.8 12.0 1.0
NE2 D:GLN196 4.9 11.2 1.0
N7A D:NAD501 4.9 12.0 1.0
OE2 D:GLU195 5.0 11.2 1.0

Reference:

C.G.Steinmetz, P.Xie, H.Weiner, T.D.Hurley. Structure of Mitochondrial Aldehyde Dehydrogenase: the Genetic Component of Ethanol Aversion. Structure V. 5 701 1997.
ISSN: ISSN 0969-2126
PubMed: 9195888
DOI: 10.1016/S0969-2126(97)00224-4
Page generated: Thu Oct 10 13:47:31 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy